Datastructure documentation

Welcome

Welcome to the documentation of data storage/processing of the Optophysiology lab in Freiburg. This documentation is meant for internal use.

Want to contribute to this amazing document ? please read the contribution guide.

First steps for datastructure_tools

Code Basics

• Introduction to python

• Using git and GitHub for version control

• Virtual environments and conda

How-to fuer alle Lebenslagen

• Create an animal

• Create a virus

• Surgery

• Water deprivation

• Behavioral Experiment

• Perfusion

• Create a general animalsheet entry

• Add new TVA

• AnimalSheet Documentation

How-to for datastructure_tools GUIs

How-to of individual tools:

• AdminCommander

• AnimalCommander

• EquipmentCommander

• FileCommander

• SessionCommander

• SurgeryCommander

• SurgeryPlanner

• VirusCommander

• WeightCommander

How-to eLabFTW

Introduction to eLabFTW lab notebook

General how-to:

• Register or Login

• Generate Apikey

• Generate signature passphrase

• Tools for administration

Guides for individual templates:

• Behavior Exp Entry

• Perfusion Entry

• Surgery Entry

• Waterdeprivation Entry

• AnimalSheetEntry

• Animal Template

• Virus Template

Code Documentation

“Is my code fast? No. But is it well documented? No. But does it work? Also no.”

Code